IL_6ZVK_246

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAAACG*CUCGC

Length

11 nucleotides

Bulged bases

6ZVK|1|e2|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_246 not in the Motif Atlas

Homologous match to IL_8GLP_171

Geometric discrepancy: 0.4114

The information below is about IL_8GLP_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|4891
6ZVK|1|e2|A|4892
6ZVK|1|e2|A|4893
6ZVK|1|e2|A|4894
6ZVK|1|e2|C|4895
6ZVK|1|e2|G|4896
*
6ZVK|1|e2|C|4924
6ZVK|1|e2|U|4925
6ZVK|1|e2|C|4926
6ZVK|1|e2|G|4927
6ZVK|1|e2|C|4928

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain Z2

Ribosomal protein L14

Chain w2

60S RIBOSOMAL PROTEIN UL13