IL_6ZVK_256

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AUGUGAUCUUAUC*GUUAUUGCUAU

Length

24 nucleotides

Bulged bases

6ZVK|1|E1|U|6283, 6ZVK|1|E1|G|6286, 6ZVK|1|E1|U|6290, 6ZVK|1|E1|U|6330, 6ZVK|1|E1|G|6331, 6ZVK|1|E1|C|6332, 6ZVK|1|E1|U|6333, 6ZVK|1|E1|A|6334

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|E1|A|6282
6ZVK|1|E1|U|6283
6ZVK|1|E1|G|6284
6ZVK|1|E1|U|6285
6ZVK|1|E1|G|6286
6ZVK|1|E1|A|6287
6ZVK|1|E1|U|6288
6ZVK|1|E1|C|6289
6ZVK|1|E1|U|6290
6ZVK|1|E1|U|6291
6ZVK|1|E1|A|6292
6ZVK|1|E1|U|6293
6ZVK|1|E1|C|6294
*
6ZVK|1|E1|G|6325
6ZVK|1|E1|U|6326
6ZVK|1|E1|U|6327
6ZVK|1|E1|A|6328
6ZVK|1|E1|U|6329
6ZVK|1|E1|U|6330
6ZVK|1|E1|G|6331
6ZVK|1|E1|C|6332
6ZVK|1|E1|U|6333
6ZVK|1|E1|A|6334
6ZVK|1|E1|U|6335

Current chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Nearby chains

Chain 42

Ribosomal protein