IL_6ZVK_262
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGAGGUUC*GUUCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|G|1040
6ZVK|1|K3|G|1041
6ZVK|1|K3|A|1042
6ZVK|1|K3|G|1043
6ZVK|1|K3|G|1044
6ZVK|1|K3|U|1045
6ZVK|1|K3|U|1046
6ZVK|1|K3|C|1047
*
6ZVK|1|K3|G|1071
6ZVK|1|K3|U|1072
6ZVK|1|K3|U|1073
6ZVK|1|K3|C|1074
6ZVK|1|K3|C|1075
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain 92
- 60S RIBOSOMAL PROTEIN UL2
- Chain F3
- ribosomal protein uS15
- Chain I2
- ribosomal protein eL43
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain a5
- 40S RIBOSOMAL PROTEIN US11
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: