IL_6ZVK_265
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GACAGGAUUGACAG*CUUUCUCGAUUC
- Length
- 26 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|1283, 6ZVK|1|K3|G|1285, 6ZVK|1|K3|U|1307, 6ZVK|1|K3|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|G|1281
6ZVK|1|K3|A|1282
6ZVK|1|K3|C|1283
6ZVK|1|K3|A|1284
6ZVK|1|K3|G|1285
6ZVK|1|K3|G|1286
6ZVK|1|K3|A|1287
6ZVK|1|K3|U|1288
6ZVK|1|K3|U|1289
6ZVK|1|K3|G|1290
6ZVK|1|K3|A|1291
6ZVK|1|K3|C|1292
6ZVK|1|K3|A|1293
6ZVK|1|K3|G|1294
*
6ZVK|1|K3|C|1305
6ZVK|1|K3|U|1306
6ZVK|1|K3|U|1307
6ZVK|1|K3|U|1308
6ZVK|1|K3|C|1309
6ZVK|1|K3|U|1310
6ZVK|1|K3|C|1311
6ZVK|1|K3|G|1312
6ZVK|1|K3|A|1313
6ZVK|1|K3|U|1314
6ZVK|1|K3|U|1315
6ZVK|1|K3|C|1316
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E3
- S10_plectin domain-containing protein
- Chain H3
- ribosomal protein uS14
- Chain Q3
- 40S RIBOSOMAL PROTEIN ES31
- Chain e3
- 40S ribosomal protein S12
Coloring options: