IL_6ZVK_269
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCC
- Length
- 34 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|1553, 6ZVK|1|K3|C|1554, 6ZVK|1|K3|U|1555, 6ZVK|1|K3|A|1580, 6ZVK|1|K3|C|1581, 6ZVK|1|K3|U|1585, 6ZVK|1|K3|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|G|1541
6ZVK|1|K3|C|1542
6ZVK|1|K3|U|1543
6ZVK|1|K3|C|1544
6ZVK|1|K3|A|1545
6ZVK|1|K3|G|1546
6ZVK|1|K3|C|1547
6ZVK|1|K3|G|1548
6ZVK|1|K3|U|1549
6ZVK|1|K3|G|1550
6ZVK|1|K3|U|1551
6ZVK|1|K3|G|1552
6ZVK|1|K3|C|1553
6ZVK|1|K3|C|1554
6ZVK|1|K3|U|1555
6ZVK|1|K3|A|1556
6ZVK|1|K3|C|1557
6ZVK|1|K3|C|1558
*
6ZVK|1|K3|G|1577
6ZVK|1|K3|U|1578
6ZVK|1|K3|A|1579
6ZVK|1|K3|A|1580
6ZVK|1|K3|C|1581
6ZVK|1|K3|C|1582
6ZVK|1|K3|C|1583
6ZVK|1|K3|G|1584
6ZVK|1|K3|U|1585
6ZVK|1|K3|U|1586
6ZVK|1|K3|G|1587
6ZVK|1|K3|A|1588
6ZVK|1|K3|A|1589
6ZVK|1|K3|C|1590
6ZVK|1|K3|C|1591
6ZVK|1|K3|C|1592
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- 40S RIBOSOMAL PROTEIN US9
- Chain E3
- S10_plectin domain-containing protein
- Chain H3
- ribosomal protein uS14
- Chain H5
- 40S RIBOSOMAL PROTEIN ES19
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain M3
- ribosomal protein eS25
- Chain N3
- Ribosomal protein S5
- Chain Y3
- Ribosomal protein S3
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