IL_6ZVK_273

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGCUC*GAGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_273 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.371

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6ZVK|1|e2|G|751
6ZVK|1|e2|G|752
6ZVK|1|e2|C|753
6ZVK|1|e2|U|754
6ZVK|1|e2|C|755
*
6ZVK|1|e2|G|908
6ZVK|1|e2|A|909
6ZVK|1|e2|G|910
6ZVK|1|e2|U|911

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain W2

60S RIBOSOMAL PROTEIN UL6

Chain Z2

Ribosomal protein L14