IL_6ZVK_274

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGGGGCCCCG*CGGGACCGAAACCCCCCC

Length

28 nucleotides

Bulged bases

6ZVK|1|e2|G|761, 6ZVK|1|e2|G|892, 6ZVK|1|e2|C|895, 6ZVK|1|e2|C|905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|757
6ZVK|1|e2|G|758
6ZVK|1|e2|G|759
6ZVK|1|e2|G|760
6ZVK|1|e2|G|761
6ZVK|1|e2|C|762
6ZVK|1|e2|C|763
6ZVK|1|e2|C|764
6ZVK|1|e2|C|765
6ZVK|1|e2|G|766
*
6ZVK|1|e2|C|889
6ZVK|1|e2|G|890
6ZVK|1|e2|G|891
6ZVK|1|e2|G|892
6ZVK|1|e2|A|893
6ZVK|1|e2|C|894
6ZVK|1|e2|C|895
6ZVK|1|e2|G|896
6ZVK|1|e2|A|897
6ZVK|1|e2|A|898
6ZVK|1|e2|A|899
6ZVK|1|e2|C|900
6ZVK|1|e2|C|901
6ZVK|1|e2|C|902
6ZVK|1|e2|C|903
6ZVK|1|e2|C|904
6ZVK|1|e2|C|905
6ZVK|1|e2|C|906

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain W2

60S RIBOSOMAL PROTEIN UL6