IL_6ZVK_276
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUCGCAGACCCGACGCACCCCCGCCACGCAGU*AAUGG
- Length
- 37 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|1698, 6ZVK|1|e2|A|1699, 6ZVK|1|e2|C|1702, 6ZVK|1|e2|C|1703, 6ZVK|1|e2|C|1704, 6ZVK|1|e2|G|1705, 6ZVK|1|e2|A|1706, 6ZVK|1|e2|C|1712, 6ZVK|1|e2|C|1715, 6ZVK|1|e2|G|1716, 6ZVK|1|e2|C|1717, 6ZVK|1|e2|A|1719, 6ZVK|1|e2|A|1723, 6ZVK|1|e2|G|1724
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|C|1694
6ZVK|1|e2|U|1695
6ZVK|1|e2|C|1696
6ZVK|1|e2|G|1697
6ZVK|1|e2|C|1698
6ZVK|1|e2|A|1699
6ZVK|1|e2|G|1700
6ZVK|1|e2|A|1701
6ZVK|1|e2|C|1702
6ZVK|1|e2|C|1703
6ZVK|1|e2|C|1704
6ZVK|1|e2|G|1705
6ZVK|1|e2|A|1706
6ZVK|1|e2|C|1707
6ZVK|1|e2|G|1708
6ZVK|1|e2|C|1709
6ZVK|1|e2|A|1710
6ZVK|1|e2|C|1711
6ZVK|1|e2|C|1712
6ZVK|1|e2|C|1713
6ZVK|1|e2|C|1714
6ZVK|1|e2|C|1715
6ZVK|1|e2|G|1716
6ZVK|1|e2|C|1717
6ZVK|1|e2|C|1718
6ZVK|1|e2|A|1719
6ZVK|1|e2|C|1720
6ZVK|1|e2|G|1721
6ZVK|1|e2|C|1722
6ZVK|1|e2|A|1723
6ZVK|1|e2|G|1724
6ZVK|1|e2|U|1725
*
6ZVK|1|e2|A|1837
6ZVK|1|e2|A|1838
6ZVK|1|e2|U|1839
6ZVK|1|e2|G|1840
6ZVK|1|e2|G|1841
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain U2
- uL30
- Chain r2
- 60S ribosomal protein L29
- Chain t2
- uL4
Coloring options: