IL_6ZVK_277
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCGCG*CCCCGGAGCCCCGCGGACGCUACG
- Length
- 68 nucleotides
- Bulged bases
- 6ZVK|1|e2|U|2089, 6ZVK|1|e2|C|2090, 6ZVK|1|e2|G|2091, 6ZVK|1|e2|A|2092, 6ZVK|1|e2|A|2094, 6ZVK|1|e2|G|2095, 6ZVK|1|e2|G|2105, 6ZVK|1|e2|C|2106, 6ZVK|1|e2|G|2110, 6ZVK|1|e2|G|2113, 6ZVK|1|e2|C|2115, 6ZVK|1|e2|G|2116, 6ZVK|1|e2|C|2122, 6ZVK|1|e2|G|2123, 6ZVK|1|e2|C|2124, 6ZVK|1|e2|G|2125, 6ZVK|1|e2|C|2248, 6ZVK|1|e2|C|2256, 6ZVK|1|e2|C|2257, 6ZVK|1|e2|G|2259, 6ZVK|1|e2|A|2263, 6ZVK|1|e2|C|2266, 6ZVK|1|e2|U|2267, 6ZVK|1|e2|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|C|2086
6ZVK|1|e2|A|2087
6ZVK|1|e2|G|2088
6ZVK|1|e2|U|2089
6ZVK|1|e2|C|2090
6ZVK|1|e2|G|2091
6ZVK|1|e2|A|2092
6ZVK|1|e2|G|2093
6ZVK|1|e2|A|2094
6ZVK|1|e2|G|2095
6ZVK|1|e2|U|2096
6ZVK|1|e2|G|2097
6ZVK|1|e2|G|2098
6ZVK|1|e2|A|2099
6ZVK|1|e2|C|2100
6ZVK|1|e2|G|2101
6ZVK|1|e2|G|2102
6ZVK|1|e2|G|2103
6ZVK|1|e2|A|2104
6ZVK|1|e2|G|2105
6ZVK|1|e2|C|2106
6ZVK|1|e2|G|2107
6ZVK|1|e2|G|2108
6ZVK|1|e2|C|2109
6ZVK|1|e2|G|2110
6ZVK|1|e2|G|2111
6ZVK|1|e2|G|2112
6ZVK|1|e2|G|2113
6ZVK|1|e2|G|2114
6ZVK|1|e2|C|2115
6ZVK|1|e2|G|2116
6ZVK|1|e2|G|2117
6ZVK|1|e2|C|2118
6ZVK|1|e2|G|2119
6ZVK|1|e2|C|2120
6ZVK|1|e2|G|2121
6ZVK|1|e2|C|2122
6ZVK|1|e2|G|2123
6ZVK|1|e2|C|2124
6ZVK|1|e2|G|2125
6ZVK|1|e2|C|2126
6ZVK|1|e2|G|2127
6ZVK|1|e2|C|2128
6ZVK|1|e2|G|2129
*
6ZVK|1|e2|C|2247
6ZVK|1|e2|C|2248
6ZVK|1|e2|C|2249
6ZVK|1|e2|C|2250
6ZVK|1|e2|G|2251
6ZVK|1|e2|G|2252
6ZVK|1|e2|A|2253
6ZVK|1|e2|G|2254
6ZVK|1|e2|C|2255
6ZVK|1|e2|C|2256
6ZVK|1|e2|C|2257
6ZVK|1|e2|C|2258
6ZVK|1|e2|G|2259
6ZVK|1|e2|C|2260
6ZVK|1|e2|G|2261
6ZVK|1|e2|G|2262
6ZVK|1|e2|A|2263
6ZVK|1|e2|C|2264
6ZVK|1|e2|G|2265
6ZVK|1|e2|C|2266
6ZVK|1|e2|U|2267
6ZVK|1|e2|A|2268
6ZVK|1|e2|C|2269
6ZVK|1|e2|G|2270
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain J2
- 60S RIBOSOMAL PROTEIN EL28
- Chain R2
- Ribosomal_L6e_N domain-containing protein
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain T2
- 60S ribosomal protein L6
- Chain U2
- uL30
- Chain t2
- uL4
- Chain v2
- eL32
Coloring options: