IL_6ZVK_278

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCUUGAAGC*GUGGAG

Length

15 nucleotides

Bulged bases

6ZVK|1|e2|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|2302
6ZVK|1|e2|C|2303
6ZVK|1|e2|U|2304
6ZVK|1|e2|U|2305
6ZVK|1|e2|G|2306
6ZVK|1|e2|A|2307
6ZVK|1|e2|A|2308
6ZVK|1|e2|G|2309
6ZVK|1|e2|C|2310
*
6ZVK|1|e2|G|2328
6ZVK|1|e2|U|2329
6ZVK|1|e2|G|2330
6ZVK|1|e2|G|2331
6ZVK|1|e2|A|2332
6ZVK|1|e2|G|2333

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain h2

5.8S ribosomal RNA; 5.8S rRNA

Chain o2

Ribosomal protein L26

Chain t2

uL4

Chain v2

eL32