IL_6ZVK_281

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6ZVK|1|e2|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_281 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1282

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|G|2847
6ZVK|1|e2|G|2848
6ZVK|1|e2|A|2849
6ZVK|1|e2|A|2850
6ZVK|1|e2|G|2851
6ZVK|1|e2|U|2852
6ZVK|1|e2|C|2853
6ZVK|1|e2|G|2854
6ZVK|1|e2|G|2855
*
6ZVK|1|e2|C|3837
6ZVK|1|e2|U|3838
6ZVK|1|e2|G|3839
6ZVK|1|e2|U|3840
6ZVK|1|e2|C|3841

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain k2

eL14