IL_6ZVK_286

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GACAUUU*ACCAUC

Length

13 nucleotides

Bulged bases

6ZVK|1|e2|C|4670, 6ZVK|1|e2|C|4671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|4623
6ZVK|1|e2|A|4624
6ZVK|1|e2|C|4625
6ZVK|1|e2|A|4626
6ZVK|1|e2|U|4627
6ZVK|1|e2|U|4628
6ZVK|1|e2|U|4629
*
6ZVK|1|e2|A|4669
6ZVK|1|e2|C|4670
6ZVK|1|e2|C|4671
6ZVK|1|e2|A|4672
6ZVK|1|e2|U|4673
6ZVK|1|e2|C|4674

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain k2

eL14

Chain l2

Ribosomal protein L24