IL_6ZVK_293
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_293 not in the Motif Atlas
- Homologous match to IL_8CRE_456
- Geometric discrepancy: 0.1821
- The information below is about IL_8CRE_456
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6ZVK|1|K3|U|1347
6ZVK|1|K3|G|1348
6ZVK|1|K3|G|1349
*
6ZVK|1|K3|C|1380
6ZVK|1|K3|G|1381
6ZVK|1|K3|A|1382
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain C3
- 40S RIBOSOMAL PROTEIN ES17
- Chain U3
- 40S_SA_C domain-containing protein
- Chain W3
- S5 DRBM domain-containing protein
- Chain Y3
- Ribosomal protein S3
Coloring options: