IL_6ZVK_294

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUACGCG*CCCCCAA

Length

14 nucleotides

Bulged bases

6ZVK|1|K3|A|1409, 6ZVK|1|K3|C|1412, 6ZVK|1|K3|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|U|1407
6ZVK|1|K3|U|1408
6ZVK|1|K3|A|1409
6ZVK|1|K3|C|1410
6ZVK|1|K3|G|1411
6ZVK|1|K3|C|1412
6ZVK|1|K3|G|1413
*
6ZVK|1|K3|C|1433
6ZVK|1|K3|C|1434
6ZVK|1|K3|C|1435
6ZVK|1|K3|C|1436
6ZVK|1|K3|C|1437
6ZVK|1|K3|A|1438
6ZVK|1|K3|A|1439

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

40S RIBOSOMAL PROTEIN US9

Chain H5

40S RIBOSOMAL PROTEIN ES19

Chain I3

Ribosomal_S10 domain-containing protein