IL_6ZVK_295

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|U|484, 6ZVK|1|e2|C|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_295 not in the Motif Atlas

Geometric match to IL_5T3K_001

Geometric discrepancy: 0.2558

The information below is about IL_5T3K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZVK|1|e2|G|482
6ZVK|1|e2|G|483
6ZVK|1|e2|U|484
6ZVK|1|e2|C|485
6ZVK|1|e2|C|486
*
6ZVK|1|e2|G|670
6ZVK|1|e2|G|671
6ZVK|1|e2|C|672

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

60S RIBOSOMAL PROTEIN EL28

Chain t2

uL4