IL_6ZVK_296

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCC*GGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCG

Length

72 nucleotides

Bulged bases

6ZVK|1|e2|A|3962, 6ZVK|1|e2|A|3963, 6ZVK|1|e2|G|3967, 6ZVK|1|e2|U|3968, 6ZVK|1|e2|A|3972, 6ZVK|1|e2|C|4030, 6ZVK|1|e2|C|4033, 6ZVK|1|e2|G|4035, 6ZVK|1|e2|C|4038, 6ZVK|1|e2|G|4042, 6ZVK|1|e2|G|4043, 6ZVK|1|e2|A|4053, 6ZVK|1|e2|C|4054, 6ZVK|1|e2|C|4059, 6ZVK|1|e2|G|4061, 6ZVK|1|e2|A|4062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|3948
6ZVK|1|e2|A|3949
6ZVK|1|e2|U|3950
6ZVK|1|e2|G|3951
6ZVK|1|e2|A|3952
6ZVK|1|e2|G|3953
6ZVK|1|e2|A|3954
6ZVK|1|e2|G|3955
6ZVK|1|e2|G|3956
6ZVK|1|e2|U|3957
6ZVK|1|e2|G|3958
6ZVK|1|e2|U|3959
6ZVK|1|e2|A|3960
6ZVK|1|e2|G|3961
6ZVK|1|e2|A|3962
6ZVK|1|e2|A|3963
6ZVK|1|e2|U|3964
6ZVK|1|e2|A|3965
6ZVK|1|e2|A|3966
6ZVK|1|e2|G|3967
6ZVK|1|e2|U|3968
6ZVK|1|e2|G|3969
6ZVK|1|e2|G|3970
6ZVK|1|e2|G|3971
6ZVK|1|e2|A|3972
6ZVK|1|e2|G|3973
6ZVK|1|e2|G|3974
6ZVK|1|e2|C|3975
6ZVK|1|e2|C|3976
6ZVK|1|e2|C|3977
6ZVK|1|e2|C|3978
6ZVK|1|e2|C|3979
*
6ZVK|1|e2|G|4026
6ZVK|1|e2|G|4027
6ZVK|1|e2|C|4028
6ZVK|1|e2|C|4029
6ZVK|1|e2|C|4030
6ZVK|1|e2|U|4031
6ZVK|1|e2|G|4032
6ZVK|1|e2|C|4033
6ZVK|1|e2|G|4034
6ZVK|1|e2|G|4035
6ZVK|1|e2|G|4036
6ZVK|1|e2|C|4037
6ZVK|1|e2|C|4038
6ZVK|1|e2|G|4039
6ZVK|1|e2|C|4040
6ZVK|1|e2|C|4041
6ZVK|1|e2|G|4042
6ZVK|1|e2|G|4043
6ZVK|1|e2|U|4044
6ZVK|1|e2|G|4045
6ZVK|1|e2|A|4046
6ZVK|1|e2|A|4047
6ZVK|1|e2|A|4048
6ZVK|1|e2|U|4049
6ZVK|1|e2|A|4050
6ZVK|1|e2|C|4051
6ZVK|1|e2|C|4052
6ZVK|1|e2|A|4053
6ZVK|1|e2|C|4054
6ZVK|1|e2|U|4055
6ZVK|1|e2|A|4056
6ZVK|1|e2|C|4057
6ZVK|1|e2|U|4058
6ZVK|1|e2|C|4059
6ZVK|1|e2|U|4060
6ZVK|1|e2|G|4061
6ZVK|1|e2|A|4062
6ZVK|1|e2|U|4063
6ZVK|1|e2|C|4064
6ZVK|1|e2|G|4065

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 42

Ribosomal protein

Chain B2

60S ribosomal protein L36