IL_6ZXD_022

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6ZXD|1|2|U|368, 6ZXD|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXD_022 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.289

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZXD|1|2|U|366
6ZXD|1|2|U|367
6ZXD|1|2|U|368
6ZXD|1|2|C|369
6ZXD|1|2|G|370
6ZXD|1|2|A|371
*
6ZXD|1|2|U|393
6ZXD|1|2|G|394

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11

Chain k

Leucine-rich repeat-containing protein 47