IL_6ZXD_032

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

6ZXD|1|2|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXD|1|2|G|563
6ZXD|1|2|A|564
6ZXD|1|2|G|565
*
6ZXD|1|2|C|585
6ZXD|1|2|G|586
6ZXD|1|2|A|587
6ZXD|1|2|G|588
6ZXD|1|2|G|589
6ZXD|1|2|A|590
6ZXD|1|2|U|591
6ZXD|1|2|C|592

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30