IL_6ZXD_033
3D structure
- PDB id
- 6ZXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCCA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXD_033 not in the Motif Atlas
- Geometric match to IL_5UNE_005
- Geometric discrepancy: 0.2647
- The information below is about IL_5UNE_005
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_76776.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZXD|1|2|U|566
6ZXD|1|2|C|567
6ZXD|1|2|C|568
6ZXD|1|2|A|569
*
6ZXD|1|2|U|581
6ZXD|1|2|U|582
6ZXD|1|2|A|583
6ZXD|1|2|A|584
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S9
- Chain Y
- 40S ribosomal protein S24
Coloring options: