IL_6ZXD_060

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAA*UUU

Length

7 nucleotides

Bulged bases

6ZXD|1|2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXD_060 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.2184

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6ZXD|1|2|G|1206
6ZXD|1|2|G|1207
6ZXD|1|2|A|1208
6ZXD|1|2|A|1209
*
6ZXD|1|2|U|1690
6ZXD|1|2|U|1691
6ZXD|1|2|U|1692

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain x

RNA-binding protein PNO1

Chain y

RNA-binding protein NOB1