IL_6ZXD_072

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXD_072 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.2377

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6ZXD|1|2|C|1363
6ZXD|1|2|U|1364
6ZXD|1|2|G|1365
*
6ZXD|1|2|C|1374
6ZXD|1|2|G|1375

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S17

Chain y

RNA-binding protein NOB1