IL_6ZXD_084

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUUGG*CUAGAG

Length

13 nucleotides

Bulged bases

6ZXD|1|2|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXD|1|2|C|1717
6ZXD|1|2|G|1718
6ZXD|1|2|A|1719
6ZXD|1|2|U|1720
6ZXD|1|2|U|1721
6ZXD|1|2|G|1722
6ZXD|1|2|G|1723
*
6ZXD|1|2|C|1811
6ZXD|1|2|U|1812
6ZXD|1|2|A|1813
6ZXD|1|2|G|1814
6ZXD|1|2|A|1815
6ZXD|1|2|G|1816

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain k

Leucine-rich repeat-containing protein 47