IL_6ZXD_092

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

6ZXD|1|2|G|1285, 6ZXD|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXD|1|2|A|1282
6ZXD|1|2|C|1283
6ZXD|1|2|A|1284
6ZXD|1|2|G|1285
6ZXD|1|2|G|1286
6ZXD|1|2|A|1287
6ZXD|1|2|U|1288
6ZXD|1|2|U|1289
6ZXD|1|2|G|1290
*
6ZXD|1|2|C|1309
6ZXD|1|2|U|1310
6ZXD|1|2|C|1311
6ZXD|1|2|G|1312
6ZXD|1|2|A|1313
6ZXD|1|2|U|1314
6ZXD|1|2|U|1315

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain M

40S ribosomal protein S12

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a