IL_6ZXD_093

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6ZXD|1|2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXD_093 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1416

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6ZXD|1|2|U|1329
6ZXD|1|2|G|1330
6ZXD|1|2|C|1331
6ZXD|1|2|A|1332
6ZXD|1|2|U|1333
*
6ZXD|1|2|A|1498
6ZXD|1|2|U|1499
6ZXD|1|2|G|1500

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain K

40S ribosomal protein S10

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain z

Serine/threonine-protein kinase RIO1