IL_6ZXD_098

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXD_098 not in the Motif Atlas

Geometric match to IL_8C3A_091

Geometric discrepancy: 0.3483

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6ZXD|1|2|U|1711
6ZXD|1|2|A|1712
*
6ZXD|1|2|U|1821
6ZXD|1|2|A|1822
6ZXD|1|2|A|1823

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain k

Leucine-rich repeat-containing protein 47

Chain z

Serine/threonine-protein kinase RIO1