IL_6ZXF_047

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6ZXF|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXF_047 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.2643

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6ZXF|1|2|G|925
6ZXF|1|2|A|926
6ZXF|1|2|C|927
*
6ZXF|1|2|G|1014
6ZXF|1|2|U|1015
6ZXF|1|2|U|1016
6ZXF|1|2|U|1017

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27