IL_6ZXF_078

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXF_078 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.1672

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZXF|1|2|U|1560
6ZXF|1|2|A|1561
6ZXF|1|2|C|1562
*
6ZXF|1|2|G|1573
6ZXF|1|2|C|1574
6ZXF|1|2|G|1575

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S19