IL_6ZXF_091

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6ZXF|1|2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXF_091 not in the Motif Atlas

Geometric match to IL_6XKO_001

Geometric discrepancy: 0.3981

The information below is about IL_6XKO_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6ZXF|1|2|C|1750
6ZXF|1|2|C|1751
*
6ZXF|1|2|G|1782
6ZXF|1|2|C|1783
6ZXF|1|2|G|1784

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains