IL_6ZXF_099

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

6ZXF|1|2|C|1403, 6ZXF|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXF_099 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.1754

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXF|1|2|A|1402
6ZXF|1|2|C|1403
6ZXF|1|2|U|1404
6ZXF|1|2|A|1405
6ZXF|1|2|G|1406
*
6ZXF|1|2|C|1440
6ZXF|1|2|U|1441
6ZXF|1|2|U|1442
6ZXF|1|2|C|1443
6ZXF|1|2|U|1444

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20