IL_6ZXG_029

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6ZXG|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXG_029 not in the Motif Atlas

Geometric match to IL_5TBW_113

Geometric discrepancy: 0.337

The information below is about IL_5TBW_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZXG|1|2|A|529
6ZXG|1|2|U|530
*
6ZXG|1|2|A|554
6ZXG|1|2|A|555
6ZXG|1|2|U|556

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30