IL_6ZXG_044

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAAAAA(PSU)(PSU)A*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXG|1|2|G|807
6ZXG|1|2|A|808
6ZXG|1|2|A|809
6ZXG|1|2|A|810
6ZXG|1|2|A|811
6ZXG|1|2|A|812
6ZXG|1|2|A|813
6ZXG|1|2|PSU|814
6ZXG|1|2|PSU|815
6ZXG|1|2|A|816
*
6ZXG|1|2|U|848
6ZXG|1|2|A|849
6ZXG|1|2|C|850
6ZXG|1|2|C|851
6ZXG|1|2|G|852
6ZXG|1|2|C|853
6ZXG|1|2|A|854
6ZXG|1|2|G|855
6ZXG|1|2|C|856

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain L

40S ribosomal protein S11

Chain W

40S ribosomal protein S15a