IL_6ZXH_085

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_085 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.0906

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZXH|1|2|G|1702
6ZXH|1|2|OMC|1703
6ZXH|1|2|C|1704
6ZXH|1|2|C|1705
*
6ZXH|1|2|G|1829
6ZXH|1|2|U|1830
6ZXH|1|2|A|1831
6ZXH|1|2|6MZ|1832
6ZXH|1|2|C|1833

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain z

Serine/threonine-protein kinase RIO1