IL_6ZXH_103

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAU(OMC)*G(A2M)AG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_103 not in the Motif Atlas

Geometric match to IL_7ECK_023

Geometric discrepancy: 0.3544

The information below is about IL_7ECK_023

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6ZXH|1|2|C|459
6ZXH|1|2|A|460
6ZXH|1|2|U|461
6ZXH|1|2|OMC|462
*
6ZXH|1|2|G|467
6ZXH|1|2|A2M|468
6ZXH|1|2|A|469
6ZXH|1|2|G|470

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6