IL_6ZXH_106
3D structure
- PDB id
- 6ZXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAAAA(PSU)(PSU)*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXH_106 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.455
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZXH|1|2|G|807
6ZXH|1|2|A|808
6ZXH|1|2|A|809
6ZXH|1|2|A|810
6ZXH|1|2|A|811
6ZXH|1|2|A|812
6ZXH|1|2|A|813
6ZXH|1|2|PSU|814
6ZXH|1|2|PSU|815
*
6ZXH|1|2|A|849
6ZXH|1|2|C|850
6ZXH|1|2|C|851
6ZXH|1|2|G|852
6ZXH|1|2|C|853
6ZXH|1|2|A|854
6ZXH|1|2|G|855
6ZXH|1|2|C|856
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain J
- 40S ribosomal protein S9
- Chain L
- 40S ribosomal protein S11
- Chain W
- 40S ribosomal protein S15a
Coloring options: