IL_7A01_008

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAUGGU*ACGUC

Length

13 nucleotides

Bulged bases

7A01|1|K3|G|113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|G|108
7A01|1|K3|U|109
7A01|1|K3|U|110
7A01|1|K3|A|111
7A01|1|K3|U|112
7A01|1|K3|G|113
7A01|1|K3|G|114
7A01|1|K3|U|115
*
7A01|1|K3|A|349
7A01|1|K3|C|350
7A01|1|K3|G|351
7A01|1|K3|U|352
7A01|1|K3|C|353

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G3

Ribosomal protein S11

Chain c3

40S ribosomal protein S8

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4