IL_7A01_009

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_009 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2486

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7A01|1|K3|U|115
7A01|1|K3|U|116
*
7A01|1|K3|G|347
7A01|1|K3|A|348
7A01|1|K3|A|349

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain c3

40S ribosomal protein S8

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4