IL_7A01_010

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCUUUGG*CCAUUCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|U|116
7A01|1|K3|C|117
7A01|1|K3|C|118
7A01|1|K3|U|119
7A01|1|K3|U|120
7A01|1|K3|U|121
7A01|1|K3|G|122
7A01|1|K3|G|123
*
7A01|1|K3|C|341
7A01|1|K3|C|342
7A01|1|K3|A|343
7A01|1|K3|U|344
7A01|1|K3|U|345
7A01|1|K3|C|346
7A01|1|K3|G|347

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain b3

40S ribosomal protein S6

Chain c3

40S ribosomal protein S8

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4