IL_7A01_042

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACCGC*GAGGCC

Length

12 nucleotides

Bulged bases

7A01|1|K3|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|G|874
7A01|1|K3|A|875
7A01|1|K3|C|876
7A01|1|K3|C|877
7A01|1|K3|G|878
7A01|1|K3|C|879
*
7A01|1|K3|G|907
7A01|1|K3|A|908
7A01|1|K3|G|909
7A01|1|K3|G|910
7A01|1|K3|C|911
7A01|1|K3|C|912

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain G3

Ribosomal protein S11

Chain P3

40S RIBOSOMAL PROTEIN ES7