IL_7A01_043
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_043 not in the Motif Atlas
- Homologous match to IL_4V88_428
- Geometric discrepancy: 0.2659
- The information below is about IL_4V88_428
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
7A01|1|K3|A|922
7A01|1|K3|G|923
*
7A01|1|K3|C|1019
7A01|1|K3|A|1020
7A01|1|K3|U|1021
7A01|1|K3|U|1022
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain L3
- 40S ribosomal protein S27
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