IL_7A01_065

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_065 not in the Motif Atlas

Geometric match to IL_5J7L_004

Geometric discrepancy: 0.2702

The information below is about IL_5J7L_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7A01|1|K3|C|1363
7A01|1|K3|U|1364
7A01|1|K3|G|1365
*
7A01|1|K3|C|1374
7A01|1|K3|G|1375

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain C3

Uncharacterized protein

Chain U3

40S_SA_C domain-containing protein