IL_7A01_067

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUA*UUCUU

Length

9 nucleotides

Bulged bases

7A01|1|K3|C|1403, 7A01|1|K3|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|A|1402
7A01|1|K3|C|1403
7A01|1|K3|U|1404
7A01|1|K3|A|1405
*
7A01|1|K3|U|1441
7A01|1|K3|U|1442
7A01|1|K3|C|1443
7A01|1|K3|U|1444
7A01|1|K3|U|1445

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

Uncharacterized protein

Chain I3

Ribosomal_S10 domain-containing protein

Chain Y3

Ribosomal protein S3