IL_7A01_070

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACC*GCGU

Length

7 nucleotides

Bulged bases

7A01|1|K3|G|1431

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_070 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.2576

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7A01|1|K3|A|1414
7A01|1|K3|C|1415
7A01|1|K3|C|1416
*
7A01|1|K3|G|1429
7A01|1|K3|C|1430
7A01|1|K3|G|1431
7A01|1|K3|U|1432

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

Uncharacterized protein

Chain H5

Uncharacterized protein