IL_7A01_072

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCGAG

Length

10 nucleotides

Bulged bases

7A01|1|K3|A|1474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|C|1453
7A01|1|K3|A|1454
7A01|1|K3|A|1455
7A01|1|K3|G|1456
*
7A01|1|K3|C|1470
7A01|1|K3|C|1471
7A01|1|K3|C|1472
7A01|1|K3|G|1473
7A01|1|K3|A|1474
7A01|1|K3|G|1475

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

Uncharacterized protein

Chain C3

Uncharacterized protein

Chain N3

Ribosomal protein S5

Chain a3

ribosomal protein RACK1