IL_7A01_073

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_073 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.3138

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7A01|1|K3|A|1537
7A01|1|K3|C|1538
7A01|1|K3|U|1539
*
7A01|1|K3|A|1594
7A01|1|K3|U|1595
7A01|1|K3|U|1596

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G5

ribosomal protein uS13

Chain H5

Uncharacterized protein

Chain M3

ribosomal protein eS25

Chain N3

Ribosomal protein S5