IL_7A01_075

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|G|1604
7A01|1|K3|G|1605
7A01|1|K3|G|1606
7A01|1|K3|A|1607
7A01|1|K3|U|1608
7A01|1|K3|C|1609
7A01|1|K3|G|1610
*
7A01|1|K3|C|1629
7A01|1|K3|A|1630
7A01|1|K3|U|1631
7A01|1|K3|G|1632
7A01|1|K3|A|1633
7A01|1|K3|A|1634
7A01|1|K3|C|1635

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain A3

ribosomal protein uS19

Chain G5

ribosomal protein uS13

Chain H5

Uncharacterized protein

Chain M3

ribosomal protein eS25