IL_7A01_103

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCUCCC*GGCCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|168
7A01|1|e2|G|169
7A01|1|e2|C|170
7A01|1|e2|U|171
7A01|1|e2|C|172
7A01|1|e2|C|173
7A01|1|e2|C|174
*
7A01|1|e2|G|262
7A01|1|e2|G|263
7A01|1|e2|C|264
7A01|1|e2|C|265
7A01|1|e2|C|266
7A01|1|e2|G|267

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain A2

uL29

Chain a7

60S ribosomal protein L13