IL_7A01_105

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

7A01|1|e2|C|185, 7A01|1|e2|G|186, 7A01|1|e2|U|187

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|182
7A01|1|e2|C|183
7A01|1|e2|U|184
7A01|1|e2|C|185
7A01|1|e2|G|186
7A01|1|e2|U|187
7A01|1|e2|G|188
7A01|1|e2|G|189
*
7A01|1|e2|C|252
7A01|1|e2|G|253
7A01|1|e2|G|254
7A01|1|e2|C|255

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain C2

Ribosomal protein L37

Chain a7

60S ribosomal protein L13

Chain o2

Ribosomal protein L26