IL_7A01_116

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUCAACC*GGCGCAUUU

Length

17 nucleotides

Bulged bases

7A01|1|e2|C|469, 7A01|1|e2|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|A|466
7A01|1|e2|U|467
7A01|1|e2|U|468
7A01|1|e2|C|469
7A01|1|e2|A|470
7A01|1|e2|A|471
7A01|1|e2|C|472
7A01|1|e2|C|473
*
7A01|1|e2|G|681
7A01|1|e2|G|682
7A01|1|e2|C|683
7A01|1|e2|G|684
7A01|1|e2|C|685
7A01|1|e2|A|686
7A01|1|e2|U|687
7A01|1|e2|U|688
7A01|1|e2|U|689

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

Uncharacterized protein

Chain T2

60S ribosomal protein L6