IL_7A01_121

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCCG*CC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_121 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.3409

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7A01|1|e2|G|500
7A01|1|e2|C|501
7A01|1|e2|C|502
7A01|1|e2|C|503
7A01|1|e2|G|504
*
7A01|1|e2|C|654
7A01|1|e2|C|655

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain t2

uL4