IL_7A01_127

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUGGG*CGC

Length

9 nucleotides

Bulged bases

7A01|1|e2|U|728, 7A01|1|e2|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|726
7A01|1|e2|C|727
7A01|1|e2|U|728
7A01|1|e2|G|729
7A01|1|e2|G|730
7A01|1|e2|G|731
*
7A01|1|e2|C|938
7A01|1|e2|G|939
7A01|1|e2|C|940

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain U2

uL30